Data and scripts associated with the publication "Thermal tolerance traits of individual corals are widely distributed across the Great Barrier Reef" - Data and scripts for Aspat-GBR-HeatTolVar

Aspat-GBR-HeatTolVar/.git
- COMMIT_EDITMSG (7 bytes)
- config (304 bytes)
- description (73 bytes)
- HEAD (21 bytes)
- index (8.9 KiB)
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Aspat-GBR-HeatTolVar/.git/hooks
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- post-update.sample (189 bytes)
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- push-to-checkout.sample (2.7 KiB)
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Aspat-GBR-HeatTolVar/.git/info
- exclude (240 bytes)
Aspat-GBR-HeatTolVar/.git/logs
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Aspat-GBR-HeatTolVar/.git/logs/refs/heads
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Aspat-GBR-HeatTolVar/.git/logs/refs/remotes/origin
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Aspat-GBR-HeatTolVar/.git/objects/05
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Aspat-GBR-HeatTolVar/.git/objects/16
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Aspat-GBR-HeatTolVar/.git/objects/31
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Aspat-GBR-HeatTolVar/.git/objects/5b
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Aspat-GBR-HeatTolVar/.git/objects/5f
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Aspat-GBR-HeatTolVar/.git/objects/60
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Aspat-GBR-HeatTolVar/.git/objects/6a
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Aspat-GBR-HeatTolVar/.git/objects/77
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Aspat-GBR-HeatTolVar/.git/objects/8a
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Aspat-GBR-HeatTolVar/.git/objects/93
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Aspat-GBR-HeatTolVar/.git/objects/9a
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Aspat-GBR-HeatTolVar/.git/objects/a1
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Aspat-GBR-HeatTolVar/.git/objects/ba
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Aspat-GBR-HeatTolVar/.git/objects/c9
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Aspat-GBR-HeatTolVar/.git/objects/d1
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Aspat-GBR-HeatTolVar/.git/objects/fd
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Aspat-GBR-HeatTolVar/.git/objects/pack
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Aspat-GBR-HeatTolVar/.git/refs/heads
- main (41 bytes)
Aspat-GBR-HeatTolVar/.git/refs/remotes/origin
- HEAD (30 bytes)
- main (41 bytes)
Aspat-GBR-HeatTolVar/Data
- Aspat_fragment_sizes.csv (425.9 KiB)
- Aspat_tanks_temperature_adj.csv (19.9 KiB)
- Aspath_chla.csv (24.1 KiB)
- ECT1_Aspat_colonies_environmental_data_24metrics.csv (262 KiB)
- ECT1_Aspat_colonies_environmental_data_uncor_v3_0.7.csv (127.1 KiB)
- ECT1_Aspat_field_data.csv (91.6 KiB)
- ECT1_Aspat_FvFm.csv (1.5 MiB)
- ECT1_Aspat_Hyperspec_NDVI.csv (1 MiB)
- GBR_Aspat_sites_data.csv (768 bytes)
- Phenotypic_trait_per_genotype.csv (177.2 KiB)
- README.md (5 KiB)
- tide_data_ECT1_v3.csv (1.5 KiB)
Aspat-GBR-HeatTolVar/Figures
- Figure_1.png (15.8 MiB)
- Figure_2.png (1.3 MiB)
- Figure_3.png (3.1 MiB)
- Figure_4.png (4.5 MiB)
- Figure_S1.png (276.2 KiB)
- Figure_S10.png (895.9 KiB)
- Figure_S11.png (499.2 KiB)
- Figure_S12.png (655.1 KiB)
- Figure_S13.png (306.7 KiB)
- Figure_S14.png (471.8 KiB)
- Figure_S2.png (434.7 KiB)
- Figure_S3.png (243.9 KiB)
- Figure_S4.png (1.5 MiB)
- Figure_S6.png (1.1 MiB)
- Figure_S7.png (541.6 KiB)
- Figure_S8.png (71.6 KiB)
- Figure_S9.png (284.1 KiB)
Aspat-GBR-HeatTolVar/Outputs/FvFm
- Chicken_W2.3_wconstraint_v2.rds (510.6 KiB)
- Davies_W2.3_wconstraint_v2.rds (342.4 KiB)
- EDs_W2.3.csv (74 KiB)
- Fitzroy Island_W2.3_wconstraint_v2.rds (473.2 KiB)
- Fitzroy Reef_W2.3_wconstraint_v2.rds (450.2 KiB)
- FvFm_Modelcomparison_AIC.csv (6.5 KiB)
- Heron_W2.3_wconstraint_v2.rds (454.3 KiB)
- Kelso_W2.3_wconstraint_v2.rds (255.8 KiB)
- Lady Musgrave_W2.3_wconstraint_v2.rds (476.6 KiB)
- Mackay_W2.3_wconstraint_v2.rds (466.4 KiB)
- Martin_W2.3_wconstraint_v2.rds (457.3 KiB)
- Moore_W2.3_wconstraint_v2.rds (259.3 KiB)
- No Name_W2.3_wconstraint_v2.rds (343.1 KiB)
- North Direction_W2.3_wconstraint_v2.rds (428 KiB)
- Parameters_W2.3.csv (238.2 KiB)
- Pelorus East_W2.3_wconstraint_v2.rds (328.6 KiB)
- St Crispin_W2.3_wconstraint_v2.rds (322.1 KiB)
Aspat-GBR-HeatTolVar/Outputs/NDVI
- Chicken_MeanNDVI_W2.3_wconstraint.rds (512.3 KiB)
- Davies_MeanNDVI_W2.3_wconstraint.rds (444.1 KiB)
- Fitzroy Island_MeanNDVI_W2.3_wconstraint.rds (521.1 KiB)
- Fitzroy Reef_MeanNDVI_W2.3_wconstraint.rds (507.5 KiB)
- Heron_MeanNDVI_W2.3_wconstraint.rds (497.1 KiB)
- Kelso_MeanNDVI_W2.3_wconstraint.rds (346.4 KiB)
- Lady Musgrave_MeanNDVI_W2.3_wconstraint.rds (478.7 KiB)
- Mackay_MeanNDVI_W2.3_wconstraint.rds (505.7 KiB)
- Martin_MeanNDVI_W2.3_wconstraint.rds (481.6 KiB)
- Moore_MeanNDVI_W2.3_wconstraint.rds (347.7 KiB)
- NDVI_ED50s.csv (77.8 KiB)
- NDVI_ED50s.csvFALSE (86.3 KiB)
- NDVI_Modelcomparison_AIC.csv (6.5 KiB)
- No Name_MeanNDVI_W2.3_wconstraint.rds (421.6 KiB)
- North Direction_MeanNDVI_W2.3_wconstraint.rds (410.6 KiB)
- Parameters_W2.3.csv (238.2 KiB)
- Pelorus East_MeanNDVI_W2.3_wconstraint.rds (353.8 KiB)
- St Crispin_MeanNDVI_W2.3_wconstraint.rds (469.1 KiB)
Aspat-GBR-HeatTolVar/Outputs/PhenoxEnv
- RF_var_importance_scaled.csv (23.3 KiB)
- RF_var_importance_summary.csv (10.6 KiB)
- RF_var_pred_accuracy_scaled.csv (10.9 KiB)
- Ridge_reg_coeff_bootstrap.csv (246.4 KiB)
- Ridge_reg_coeff_bootstrap_summary.csv (11.5 KiB)
- Ridge_reg_plot_coeff.csv (435.1 KiB)
- Ridge_reg_plot_lambda.csv (66.5 KiB)
- Ridge_reg_Rsq_bootstrap.csv (20.4 KiB)
- t (2 bytes)
Aspat-GBR-HeatTolVar
- README.md (2.5 KiB)
Aspat-GBR-HeatTolVar/Scripts
- Correct_colony_depth_v2.Rmd (4.2 KiB)
- Env_data_analysis_v4.Rmd (7.6 KiB)
- FvFm_ED50.Rmd (16.9 KiB)
- Global_figure_phenoxenv_analyses.Rmd (16.4 KiB)
- heat_tol_variation_plotting_functions.R (7.8 KiB)
- IPAM_ImagingWin_semi_auto_data_extraction_english_version.py (4.7 KiB)
- NDVI_Chla_correlation.Rmd (12.1 KiB)
- NDVI_ED50.Rmd (8.3 KiB)
- Phenotypic_trait_variation_v2.Rmd (29.7 KiB)
- Phenotypic_traits_filtration_and_merging.Rmd (2.9 KiB)
- Random_forest_analysis_v3.Rmd (8.7 KiB)
- README.md (1.8 KiB)
- Ridge_regression_v2.Rmd (12.6 KiB)