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Short Tailed Shearwater DREAM gene sequencing fastq files

Created 13/03/2025

Updated 13/03/2025

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This data set includes unprocessed sample .fastq files from two separate Illumina NextSeq runs, labelled as 'Run_1' and 'Run_2', respectively. Sample names: e.g. STS15059, 'STS' is the abbreviation of Short-tailed shearwater. The first two digits of the numeric refer to the year of collection e.g. '15' = 2015. Finally, the following number refers to the sequential unique ID for that year, e.g. '059' is the fifty-ninth sample for the years' collection. Leg bands are also recorded and are generally a 5-digit number and are unique to the individual bird. Longitudinal samples can be identified using these band IDs. E.g. in Run_2, an individual with the band number: 52196, was collected in 2015 as 'STS15065' and again in 2017 as 'STS17044'. Run_1: N = 35 individual samples are split across 4 lanes e.g. 'STS16020_S35_L001(/L002/L003/L004)_R1_001/fastq' and need to be merged before conversion to .fasta format and downstream analysis. Run_2: N = 36 individual samples were provided as a single merged file from the service provider, e.g. 'STS15059_S34_R1_001.fastq'. Sample_info: This excel spreadsheet has information on samples as follows: 'Band': 5-digit number on leg band. 'Sample': Sample number within run. 'UID': The unique ID for collection year e.g. STS15007. 'Age': The known-age of the animal rounded to whole year. 'Index (NebNext)': The NEB index used for NGS sample identification. 'Note': Additional information on if a sample was a between or within run replicate or longitudinal replicate. Analysis of these data will be published in: [tba: R. De Paoli-Iseppi et al. 2018. Molecular Ecology Resources].

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Additional Info

Field Value
Title Short Tailed Shearwater DREAM gene sequencing fastq files
Language eng
Licence notspecified
Landing Page https://devweb.dga.links.com.au/data/dataset/a4ab79ef-5383-4b6d-b5f0-f81ebe15114c
Contact Point
CSIRO Oceans & Atmosphere
metadata@aad.gov.au
Reference Period 01/11/2015 - 31/12/2017
Geospatial Coverage {"type": "Polygon", "coordinates": [[[148.08609, -40.31723], [148.34579, -40.31723], [148.34579, -40.20825], [148.08609, -40.20825], [148.08609, -40.31723]]]}
Data Portal data.gov.au

Data Source

This dataset was originally found on data.gov.au "Short Tailed Shearwater DREAM gene sequencing fastq files". Please visit the source to access the original metadata of the dataset:
https://devweb.dga.links.com.au/data/dataset/short-tailed-shearwater-dream-gene-sequencing-fastq-files