This dataset consists of measurements of the exchange of energy and mass between the surface and the atmospheric boundary-layer in dry sclerophyll forest using eddy covariance techniques. The Wombat State Forest site is a secondary re-growth forest that was last harvested in 1980. Dominant tree species are Eucalyptus obliqua (messmate stringybark), Eucalyptus radiata (narrow leaf peppermint) and Eucalyptus rubida (candlebark) with an average canopy height of 25m. The understorey consists mainly of patchy grasses and the soil is a silty-clay overlying clay. The forest is managed by the Department of Sustainability and Environment and management includes selective harvesting and prescribed burning regimes. The climate of the study area is classified as cool-temperate to Mediterranean zone with cold and wet winters (May-Aug) and warm and dry summers (Dec-Feb) with a temperature range: 1-30 °C and mean annual air temperature (2001-2012): 12.1°C. Annual rainfall is approximately 871 mm (142 year long-term average). Coherent automated measurements of soil greenhouse gas fluxes (CO2, CH4 and N2O) were collected using a trailer-mounted mobile laboratory – Fourier transform infra-red (FTIR) spectrometer from 2010 to 2016. Measurement height was 30m but increased to 33m from January 2017This data is also available at http://data.ozflux.org.au .